1)   Robles-Sikisaka, R., Ly M., Boehm T., Naidu M., Salzman J., and Pride D.T. 2013.      

      Association between living environment and human oral viral ecology. ISME J. PMID    


2)   Naidu, M., Robles-Sikisaka, R., Abeles S.R., Boehm T.K., and Pride D.T. 2014.

      Characterization of bacteriophage communities and CRISPR profiles from dental plaque.

      BMC Microbiol. 14:175. PMID 24981669. Highly Accessed.

3)   Robles-Sikisaka, R., Naidu M., Ly M., Salzman J., Abeles S.R., Boehm T.K., and Pride D.T.

      2014. Conservation of streptococcal CRISPRs on human skin and saliva. BMC Microbiol. 14:

      146. PMID 24903519.

4)   Ly, M., Abeles S.R., Boehm T.K., Robles-Sikisaka R., Naidu M., Santiago-Rodriguez T., and

      Pride D.T. 2014. Altered oral viral ecology in association with periodontal disease. MBio. 5:

      e01133-14. PMID 24846382.

5)   Abeles, S.R., Robles-Sikisaka, R., Ly M., Lum, A.G., Salzman, J., Boehm T.K., and Pride D.T.

      2014. Human oral viruses are personal, persistent, and gender consistent. ISME J. 9: 1753-

      1767. PMID 24646696

6)   Santiago-Rodriguez, T.M., Naidu M., Abeles S.R., Boehm T.K., Ly M., and Pride D.T.
      2015. Transcriptome analysis of bacteriophage communities in periodontal health and

      disease. BMC Genomics. 16(1): 549. PMID 26215258.

7)   Lum, A.G., Santiago-Rodriguez T.M., Naidu M., Boehm T.K., and Pride D.T. 2015. Global

      transcription of CRISPR loci in the human oral cavity. BMC Genomics. 16: 401. PMID


8)   Santiago-Rodriguez, T.M., Ly M., Bonilla N., and Pride D.T. 2015. The human urine virome in

      association with urinary tract infections. Front Microbiol. 6:14. PMID 25667584.

9)   Santiago-Rodriguez, T.M. Naidu M., Jones M.B., Ly M., and Pride D.T. 2015. Identification of

      staphylococcal phage with reduced transcription in human blood through transcriptome

      sequencing. Front Microbiol. PMID 26074882.

10)   Abeles, S.R., Ly M., Santiago-Rodriguez T.M., and Pride D.T. 2015. Effects of long term

        antibiotic therapy on human oral and fecal viromes. PLoS One. 10: e0134941. PMID


11)   Santiago-Rodriguez, T.M., Ly M., Daigneault M.C., Brown I.H., McDonald J.A., Bonilla N.,

        Allen-Vercoe E., and Pride D.T. 2015. Chemostat culture systems support diverse

        bacteriophage communities from human feces. Microbiome. 3: 58. PMID 26549756.

12)   Abeles, S.R., Jones, M.B., Santiago-Rodriguez, T.M., Ly, M., Klitgord, N., Yooseph, S.,
​        Nelson, K.E., and Pride, D.T. 2016. Microbial diversity in individuals and their household

        contacts following typical antibiotic courses. Microbiome. PMID 27473422.

​13)   Ly, M. Jones, M.B., Abeles, S.R., Santiago-Rodriguez, T.M., Gao, J., Chan, I.C., Ghose, C.,

        and Pride, D.T. 2016. Transmission of viruses via our microbiomes. Microbiome. PMID


14)   Pannaraj, P.S., Ly M., Cerini C., Saavedra M., Aldrovandi G.M., Saboory A.A., Johnson K.M.,

         and Pride, D.T. 2018. Shared and Distinct Features of Human Milk and Infant Stool Viromes.

​         Front Microbiol. 9: 1162. PMID 29910789.


1)   Abeles, S.R, and Pride D.T. 2014. Molecular bases and role of viruses in the human

        microbiome. J. Mol. Biol. PMID 25020228.

2)   Edlund, A., Santiago-Rodriguez T.M., Boehm T.K., and Pride D.T. 2015. Bacteriophage and

        their potential roles in the human oral cavity. J Oral Microbiol. 7: 27423. PMID 25861745.